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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
726
ChIP-seq
Assay category
726
DNA binding
Target of assay
726
histone modification
725
histone
411
transcription factor
370
narrow histone mark
355
broad histone mark
94
RNA binding protein
88
recombinant protein
31
chromatin remodeller
7
control
5
other context
5
other post-translational modification
Date released
169
October, 2019
91
May, 2019
85
May, 2021
78
August, 2017
73
November, 2017
59
April, 2019
35
May, 2024
32
September, 2018
30
October, 2018
19
June, 2019
19
May, 2020
10
November, 2019
7
December, 2017
7
January, 2019
6
October, 2017
3
August, 2021
3
March, 2020
Available data
723
bigWig
709
bed narrowPeak
689
bam
378
bigBed narrowPeak
223
tagAlign
162
fastq
40
bed broadPeak
26
bigBed broadPeak
17
bed bed3+
1
tagAlign bed3+
Organism
720
Homo sapiens
Biosample type
494
tissue
198
primary cell
in vitro differentiated cells
32
cell line
2
stem cell
Organ
168
brain
135
pancreas
96
heart
73
epithelium
66
vasculature
65
blood vessel
58
liver
47
limb
30
kidney
24
nerve
20
artery
13
musculature of body
10
vein
9
connective tissue
6
spleen
1
adipose tissue
1
blood
1
bodily fluid
1
eye
1
pituitary gland
Project
638
AMP
88
T1D
Genome assembly (visualization)
726
GRCh38
707
hg19
Lab
607
AMP-T2D consortium
84
Kyle Gaulton, UCSD
35
Patrick T. Ellinor, Broad
Audit category:
31
inconsistent ontology term
Audit category:
52
missing controlled_by
Audit category:
22
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
vcf
BIOSAMPLE
ASSAY
726 results
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Clear Filters
ChIP-seq
tissue
liver
37
left cardiac atrium
35
tibial nerve
24
heart left ventricle
23
kidney
20
+ See 98 more…
primary cell
monocyte
84
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
12
endothelial cell of umbilical vein
10
+ See 15 more…
cell line
HepG2
13
EndoC_BH1
12
Panc1
6
GM12878
1
stem cell
hESC
2
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