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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1150total RNA-seq
  • 1146ChIP-seq
  • 217ATAC-seq
  • 206DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1274Transcription
  • 1146DNA binding
  • 423DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 726histone modification
  • 725histone
  • 411transcription factor
  • 370narrow histone mark
  • 355broad histone mark
  • 94RNA binding protein
  • 88recombinant protein
  • 31chromatin remodeller
  • 7control
  • 5other context
  • 5other post-translational modification
Date released
  • 546February, 2021
  • 280November, 2017
  • 210June, 2019
  • 207May, 2020
  • 203October, 2019
  • 200August, 2017
  • 192May, 2021
  • 164July, 2018
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 75August, 2021
  • 72September, 2018
  • 64April, 2019
  • 52November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 39December, 2017
  • 35February, 2023
  • 30December, 2018
  • 26January, 2019
  • 14March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2694bam
  • 2687bigWig
  • 1504bed narrowPeak
  • 1273tsv
  • 983bigBed narrowPeak
  • 833fastq
  • 281bed broadPeak
  • 266bigBed broadPeak
  • 239bed bed3+
  • 228tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2856Homo sapiens
Biosample type
  • 1859tissue
  • 536primary cell
  • 464cell line
  • in vitro differentiated cells
  • 3stem cell
Organ
  • 633pancreas
  • 517liver
  • 512connective tissue
  • 424adipose tissue
  • 274epithelium
  • 265heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 18ureter
  • 16spleen
  • 12vein
  • 8embryo
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2665AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2916hg19
  • 2862GRCh38
  • 1hg18
Lab
  • 2553AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 97inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

2862 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
stem cell
hESC3
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