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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
7
DNA binding
6
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
7
recombinant protein
7
transcription factor
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
Date released
204
November, 2017
114
February, 2021
87
May, 2021
57
November, 2018
27
December, 2018
25
August, 2021
24
August, 2017
19
January, 2019
18
October, 2019
16
December, 2017
15
February, 2018
8
November, 2019
6
March, 2020
Available data
17
bam
16
bigWig
11
bed narrowPeak
6
tsv
2
bed bed3+
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
18
Homo sapiens
Biosample type
14
cell line
tissue
primary cell
4
in vitro differentiated cells
Organ
12
kidney
2
epithelium
2
pancreas
Project
18
AMP
Genome assembly (visualization)
22
hg19
18
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
Panc1
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
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