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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
Assay category
193
DNA binding
Target of assay
420
transcription factor
419
histone modification
418
histone
224
broad histone mark
193
narrow histone mark
89
RNA binding protein
88
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
37
October, 2019
24
August, 2017
22
April, 2019
22
May, 2019
19
May, 2020
15
May, 2024
11
October, 2018
10
December, 2017
8
February, 2018
7
August, 2021
6
November, 2017
4
November, 2019
3
January, 2019
3
March, 2020
2
May, 2021
Available data
204
bigWig
202
bed narrowPeak
189
bam
92
bigBed narrowPeak
67
fastq
42
tagAlign
bed bed3+
7
bed broadPeak
5
bigBed broadPeak
Organism
191
Homo sapiens
Biosample type
141
tissue
primary cell
36
in vitro differentiated cells
16
cell line
Organ
brain
39
liver
37
heart
30
pancreas
18
blood vessel
18
vasculature
14
epithelium
13
connective tissue
13
limb
10
kidney
8
nerve
6
artery
6
embryo
2
spleen
1
adipose tissue
1
blood
1
bodily fluid
1
musculature of body
1
pituitary gland
Project
189
AMP
4
T1D
Genome assembly (visualization)
199
hg19
193
GRCh38
Lab
178
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed bed3+
organ_slims!
brain
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ChIP-seq
tissue
liver
26
left cardiac atrium
15
kidney
10
heart left ventricle
8
tibial nerve
8
+ See 30 more…
in vitro differentiated cells
adipocyte
12
neural progenitor cell
7
hepatocyte
5
pancreatic endoderm
4
Hepatic endoderm
2
+ See 6 more…
cell line
EndoC_BH1
6
HepG2
6
Panc1
3
GM12878
1
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