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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
DNase-seq
50
ChIP-seq
1
Hi-C
Assay category
109
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
95
June, 2019
33
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
2
September, 2017
Available data
2278
bam
2255
bigWig
1157
bed narrowPeak
1142
tsv
752
bigBed narrowPeak
668
fastq
169
bed broadPeak
160
bed bed3+
154
bigBed broadPeak
148
tagAlign
17
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
160
Homo sapiens
Biosample type
136
tissue
primary cell
19
in vitro differentiated cells
3
stem cell
2
cell line
Organ
kidney
36
limb
32
musculature of body
29
pancreas
27
brain
27
heart
18
ureter
13
connective tissue
6
adipose tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
160
AMP
Genome assembly (visualization)
160
GRCh38
153
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
blood
kidney
BIOSAMPLE
ASSAY
160 results
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DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 32 more…
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
stem cell
hESC
3
cell line
Panc1
1
1
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