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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
90
ChIP-seq
55
ATAC-seq
39
DNase-seq
2
WGBS
Assay category
118
Transcription
94
DNA accessibility
90
DNA binding
2
DNA methylation
Target of assay
83
histone
83
histone modification
56
broad histone mark
27
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
130
February, 2021
52
October, 2019
44
May, 2019
35
February, 2023
35
June, 2019
7
July, 2019
1
March, 2020
Available data
269
bam
253
bigWig
184
bed narrowPeak
125
bigBed narrowPeak
118
tsv
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
304
Homo sapiens
Biosample type
240
tissue
64
cell line
primary cell
Organ
534
connective tissue
520
liver
443
pancreas
422
adipose tissue
256
heart
203
brain
177
kidney
169
blood vessel
169
vasculature
126
artery
96
limb
69
epithelium
66
bone element
54
blood
54
bodily fluid
42
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
304
AMP
Genome assembly (visualization)
304
GRCh38
273
hg19
Lab
304
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
bone tissue
58
coronary artery
3
36
2
tibial nerve
4
24
1
2
tibial artery
18
1
2
muscle of leg
5
13
1
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cell line
smooth muscle cell of the coronary artery
52
4
8
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