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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1127total RNA-seq
  • 1059ChIP-seq
  • 185ATAC-seq
  • 180DNase-seq
  • 17WGBS
  • 16small RNA-seq
  • 6single cell RNA-seq
  • 1Hi-C
Assay category
  • 1149Transcription
  • 1059DNA binding
  • 365DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 606histone modification
  • 605histone
  • 439transcription factor
  • 308narrow histone mark
  • 296broad histone mark
  • 91RNA binding protein
  • 88recombinant protein
  • 33chromatin remodeller
  • 9control
  • 5other context
  • 5other post-translational modification
Date released
  • 566February, 2021
  • 274November, 2017
  • 207August, 2017
  • 185October, 2019
  • 163June, 2019
  • 162May, 2020
  • 127May, 2021
  • 116July, 2018
  • 102August, 2021
  • 92May, 2019
  • 79November, 2018
  • 77December, 2017
  • 64April, 2019
  • 61July, 2019
  • 57November, 2019
  • 45October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 6April, 2018
  • 2March, 2019
  • 2September, 2017
Available data
  • 2434bam
  • 2411bigWig
  • 1371bed narrowPeak
  • 1148tsv
  • 893bigBed narrowPeak
  • 722fastq
  • 237bed broadPeak
  • 228bed bed3+
  • 222bigBed broadPeak
  • 148tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 1bed bed3
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 2585Homo sapiens
Biosample type
  • 1859tissue
  • primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 534connective tissue
  • 520liver
  • 443pancreas
  • 422adipose tissue
  • 256heart
  • 203brain
  • 177kidney
  • 169blood vessel
  • 169vasculature
  • 126artery
  • 96limb
  • 69epithelium
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 42musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 8skeleton
  • 3eye
  • 1pituitary gland
Project
  • 2585AMP
  • 6T1D
Genome assembly (visualization)
  • 2591GRCh38
  • 2585hg19
  • 5hg18
Lab
  • 2473AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 160inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 6inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2591 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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