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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
total RNA-seq
1
DNase-seq
Assay category
13
DNA binding
6
Transcription
1
DNA accessibility
Target of assay
7
recombinant protein
7
transcription factor
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
Date released
20
October, 2019
12
June, 2019
4
July, 2019
4
May, 2019
Available data
20
bam
20
bigWig
14
bed narrowPeak
6
tsv
1
bigBed narrowPeak
Organism
20
Homo sapiens
Biosample type
12
cell line
8
primary cell
tissue
Organ
23
epithelium
20
kidney
12
blood vessel
12
vasculature
12
vein
8
pancreas
1
liver
Project
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
20
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
biosample_type!
tissue
files.file_type!
xls
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
total RNA-seq
DNase-seq
cell line
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
primary cell
epithelial cell of proximal tubule
6
kidney glomerular epithelial cell
1
kidney tubule cell
1
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