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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
23
DNase-seq
Assay category
58
DNA binding
23
DNA accessibility
Target of assay
34
transcription factor
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
5
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
46
November, 2017
20
June, 2019
13
August, 2017
1
November, 2020
1
October, 2019
Available data
1165
bam
1135
bigWig
717
bed narrowPeak
667
fastq
424
tsv
423
bigBed narrowPeak
126
tagAlign
81
bed broadPeak
81
bigBed broadPeak
48
bed bed3+
2
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
81
Homo sapiens
Biosample type
tissue
45
cell line
35
primary cell
1
in vitro differentiated cells
Organ
46
liver
20
epithelium
11
brain
10
kidney
vasculature
7
connective tissue
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
81
AMP
Genome assembly (visualization)
91
hg19
81
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
month_released!
December, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
1
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
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