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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
26
total RNA-seq
14
ATAC-seq
Assay category
255
DNA binding
26
Transcription
14
DNA accessibility
Target of assay
204
transcription factor
66
recombinant protein
48
histone
48
histone modification
31
RNA binding protein
24
broad histone mark
24
narrow histone mark
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
238
May, 2021
223
November, 2017
116
February, 2021
91
August, 2017
72
September, 2018
57
November, 2018
48
July, 2018
47
June, 2019
46
October, 2019
45
May, 2020
43
April, 2018
41
August, 2021
41
December, 2017
31
February, 2018
27
December, 2018
20
January, 2019
18
July, 2019
18
November, 2019
7
August, 2020
7
March, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
295
bam
295
bigWig
295
fastq
269
bed narrowPeak
237
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
26
tsv
9
tagAlign
Organism
295
Homo sapiens
Biosample type
217
cell line
78
primary cell
tissue
Organ
217
liver
72
pancreas
65
epithelium
6
brain
4
vasculature
2
blood vessel
Project
295
AMP
Genome assembly (visualization)
347
hg19
295
GRCh38
Lab
295
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
217
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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