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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 676ChIP-seq
  • 381total RNA-seq
  • 100single cell RNA-seq
  • 76ATAC-seq
  • 30DNase-seq
  • 2Hi-C
  • 2small RNA-seq
  • 1WGBS
Assay category
  • 676DNA binding
  • 483Transcription
  • 106DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 355transcription factor
  • 310histone
  • 310histone modification
  • 159narrow histone mark
  • 150broad histone mark
  • 88recombinant protein
  • 73RNA binding protein
  • 32chromatin remodeller
  • 9control
  • 2other context
  • 2other post-translational modification
Date released
  • 238May, 2021
  • 223November, 2017
  • 116February, 2021
  • 91August, 2017
  • 72September, 2018
  • 57November, 2018
  • 48July, 2018
  • 47June, 2019
  • 46October, 2019
  • 45May, 2020
  • 43April, 2018
  • 41August, 2021
  • 41December, 2017
  • 31February, 2018
  • 27December, 2018
  • 20January, 2019
  • 18July, 2019
  • 18November, 2019
  • 7August, 2020
  • 7March, 2020
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 4May, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2October, 2018
  • 1March, 2023
Available data
  • 1256bam
  • 1218bigWig
  • 749bed narrowPeak
  • 671fastq
  • 483tsv
  • 443bigBed narrowPeak
  • 130tagAlign
  • 91bed broadPeak
  • 91bigBed broadPeak
  • 54bed bed3+
  • 2bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1hic
Organism
  • 1268Homo sapiens
Biosample type
  • tissue
  • 536primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 294epithelium
  • 293liver
  • 249pancreas
  • 86connective tissue
  • 86vasculature
  • 82blood vessel
  • 75heart
  • 66artery
  • 54blood
  • 54bodily fluid
  • 40kidney
  • 29embryo
  • 14brain
  • 12vein
  • 11musculature of body
  • 3eye
  • 2adipose tissue
  • 1pericardium
Project
  • 1073AMP
  • 184T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 1458hg19
  • 1268GRCh38
  • 5hg18
Lab
  • 1077AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 10Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 192inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 54missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1268 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
WGBS
primary cell
monocyte845313
pancreatic alpha cell7101213
pancreatic beta cell7101210
pancreatic ductal cell134104
pancreatic acinar cell84125
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
EndoC_BH113331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte4841
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm134
stem cell
hESC3
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