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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
462
ChIP-seq
179
total RNA-seq
19
ATAC-seq
3
DNase-seq
1
Hi-C
1
WGBS
Assay category
462
DNA binding
179
Transcription
22
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
342
transcription factor
110
histone
110
histone modification
88
recombinant protein
64
RNA binding protein
56
narrow histone mark
53
broad histone mark
31
chromatin remodeller
5
control
2
other context
2
other post-translational modification
Date released
217
November, 2017
89
May, 2021
57
November, 2018
50
February, 2021
49
August, 2017
38
August, 2021
38
December, 2017
31
February, 2018
27
December, 2018
24
October, 2019
20
January, 2019
18
November, 2019
7
March, 2020
Available data
664
bam
641
bigWig
474
bed narrowPeak
439
fastq
338
bigBed narrowPeak
179
tsv
46
bed broadPeak
46
bigBed broadPeak
28
tagAlign
21
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
665
Homo sapiens
Biosample type
1754
tissue
514
primary cell
400
cell line
265
in vitro differentiated cells
3
stem cell
Organ
282
liver
69
epithelium
65
heart
64
artery
64
blood vessel
vasculature
57
pancreas
54
blood
54
bodily fluid
54
connective tissue
29
embryo
12
kidney
Project
661
AMP
4
T1D
Genome assembly (visualization)
763
hg19
665
GRCh38
4
hg18
Lab
665
AMP-T2D consortium
Audit category:
156
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
39
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
organ_slims!
gonad
vasculature
BIOSAMPLE
ASSAY
665 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
48
4
1
neural progenitor cell
13
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
13
4
+ See 24 more…
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