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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
254
total RNA-seq
52
ATAC-seq
52
single cell RNA-seq
29
DNase-seq
2
Hi-C
2
small RNA-seq
1
WGBS
Assay category
553
DNA binding
308
Transcription
81
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
318
transcription factor
230
histone
230
histone modification
118
narrow histone mark
112
broad histone mark
88
recombinant protein
67
RNA binding protein
29
chromatin remodeller
3
control
2
other context
2
other post-translational modification
Date released
223
November, 2017
154
May, 2021
94
February, 2021
72
September, 2018
57
November, 2018
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
42
October, 2019
27
December, 2018
20
January, 2019
18
July, 2019
13
November, 2019
11
August, 2021
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
940
bam
918
bigWig
619
bed narrowPeak
495
fastq
428
bigBed narrowPeak
308
tsv
112
tagAlign
90
bed broadPeak
90
bigBed broadPeak
32
bed bed3+
2
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
945
Homo sapiens
Biosample type
1743
tissue
481
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
279
liver
234
epithelium
203
pancreas
86
vasculature
82
blood vessel
74
heart
66
artery
54
blood
54
bodily fluid
40
kidney
30
connective tissue
14
brain
12
vein
11
musculature of body
8
embryo
3
eye
2
adipose tissue
1
pericardium
Project
757
AMP
184
T1D
3
HPAP
1
ITG
Genome assembly (visualization)
1110
hg19
945
GRCh38
Lab
761
AMP-T2D consortium
180
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
87
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
49
missing controlled_by
Audit category:
27
inconsistent control read length
7
inconsistent control run_type
3
inconsistent assembly
month_released!
August, 2020
July, 2018
BIOSAMPLE
ASSAY
945 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
small RNA-seq
WGBS
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
8
5
pancreatic beta cell
7
10
8
3
pancreatic ductal cell
13
4
4
7
pancreatic acinar cell
8
4
5
7
+ See 70 more…
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
+ See 7 more…
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