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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
958
total RNA-seq
935
ChIP-seq
179
DNase-seq
168
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
1
Hi-C
Assay category
980
Transcription
935
DNA binding
347
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Target of assay
525
histone modification
524
histone
402
transcription factor
266
narrow histone mark
258
broad histone mark
88
recombinant protein
85
RNA binding protein
30
chromatin remodeller
5
other context
5
other post-translational modification
3
control
Date released
544
February, 2021
274
November, 2017
181
October, 2019
163
June, 2019
162
May, 2020
158
August, 2017
116
July, 2018
92
May, 2019
79
November, 2018
72
August, 2021
64
April, 2019
61
July, 2019
52
November, 2019
45
October, 2018
May, 2021
40
May, 2024
36
December, 2017
35
February, 2023
30
December, 2018
26
January, 2019
14
March, 2020
14
October, 2017
12
May, 2023
6
April, 2018
2
March, 2019
2
September, 2017
Available data
2123
bam
2123
bigWig
1240
bed narrowPeak
979
tsv
878
bigBed narrowPeak
601
fastq
236
bed broadPeak
221
bigBed broadPeak
206
bed bed3+
130
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
2274
Homo sapiens
Biosample type
1821
tissue
459
cell line
387
primary cell
181
in vitro differentiated cells
3
stem cell
Organ
506
liver
480
connective tissue
422
adipose tissue
400
pancreas
253
heart
203
brain
177
kidney
169
blood vessel
169
vasculature
126
artery
96
limb
66
bone element
54
blood
54
bodily fluid
44
epithelium
42
musculature of body
31
nerve
18
ureter
16
spleen
8
embryo
8
skeleton
3
eye
1
pituitary gland
Project
2275
AMP
5
T1D
Genome assembly (visualization)
2280
GRCh38
2242
hg19
Lab
2162
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
56
inconsistent ontology term
28
inconsistent control
1
inconsistent replicate
Audit category:
30
missing controlled_by
Audit category:
28
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
month_released!
May, 2021
BIOSAMPLE
ASSAY
2280 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
224
25
1
22
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
+ See 140 more…
cell line
HepG2
5
261
1
1
smooth muscle cell of the coronary artery
52
4
8
GM12878
54
EndoC_BH1
29
12
1
H1-hESC
8
+ See 7 more…
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