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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
99
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
331
DNA binding
99
Transcription
12
DNA accessibility
1
3D chromatin structure
Target of assay
295
transcription factor
88
recombinant protein
52
RNA binding protein
31
histone
31
histone modification
22
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
56
November, 2018
27
December, 2018
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
443
bam
434
bigWig
343
bed narrowPeak
308
bigBed narrowPeak
301
fastq
99
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
bigBed bedMethyl
1
hdf5
Organism
443
Homo sapiens
Biosample type
1837
tissue
531
primary cell
443
cell line
265
in vitro differentiated cells
3
stem cell
Organ
262
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
49
epithelium
39
blood
39
bodily fluid
12
kidney
8
embryo
Project
439
AMP
4
T1D
Genome assembly (visualization)
510
hg19
443
GRCh38
Lab
443
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
month_released!
December, 2019
January, 2019
BIOSAMPLE
ASSAY
443 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
261
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
39
H1-hESC
8
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