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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
455
bam
446
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
360
Homo sapiens
Biosample type
942
tissue
360
cell line
284
primary cell
123
in vitro differentiated cells
3
stem cell
Organ
263
liver
54
blood
54
bodily fluid
22
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
358
AMP
2
T1D
Genome assembly (visualization)
425
hg19
360
GRCh38
Lab
360
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
embryo
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
1
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
1
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