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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
292
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
258
transcription factor
88
recombinant protein
48
RNA binding protein
31
histone
31
histone modification
18
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
45
November, 2018
20
October, 2019
13
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
409
bam
400
bigWig
304
bed narrowPeak
269
bigBed narrowPeak
267
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
410
Homo sapiens
Biosample type
1763
tissue
536
primary cell
410
cell line
265
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
406
AMP
4
T1D
Genome assembly (visualization)
475
hg19
410
GRCh38
Lab
410
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
vcf
organ_slims!
blood
limb
BIOSAMPLE
ASSAY
410 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
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