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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
341
ChIP-seq
26
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
341
DNA binding
26
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
304
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
371
bam
371
bigWig
344
bed narrowPeak
323
bigBed narrowPeak
321
fastq
45
bed broadPeak
45
bigBed broadPeak
26
tsv
9
tagAlign
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
372
Homo sapiens
Biosample type
1343
tissue
522
primary cell
372
cell line
243
in vitro differentiated cells
3
stem cell
Organ
267
liver
54
blood
54
bodily fluid
29
pancreas
23
epithelium
12
kidney
8
embryo
Project
368
AMP
4
T1D
Genome assembly (visualization)
437
hg19
372
GRCh38
Lab
372
AMP-T2D consortium
Audit category:
31
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
xls
month_released!
February, 2021
organ_slims!
vein
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
GM12878
54
EndoC_BH1
13
7
1
H1-hESC
8
Panc1
6
1
1
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