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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
319
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
319
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
284
transcription factor
88
recombinant protein
56
RNA binding protein
32
histone
32
histone modification
26
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
57
November, 2018
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
436
bam
427
bigWig
331
bed narrowPeak
296
bigBed narrowPeak
294
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
437
Homo sapiens
Biosample type
1856
tissue
536
primary cell
437
cell line
265
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
49
epithelium
27
blood
27
bodily fluid
12
kidney
8
embryo
Project
433
AMP
4
T1D
Genome assembly (visualization)
503
hg19
437
GRCh38
Lab
437
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
month_released!
April, 2020
December, 2018
organ_slims!
thymus
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
27
H1-hESC
8
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