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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
96
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
318
DNA binding
96
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
204
November, 2017
92
February, 2021
50
November, 2018
25
December, 2018
20
October, 2019
14
January, 2019
13
November, 2019
5
March, 2020
5
May, 2021
Available data
427
bam
418
bigWig
330
bed narrowPeak
295
bigBed narrowPeak
293
fastq
96
tsv
41
bed broadPeak
41
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
428
Homo sapiens
Biosample type
1857
tissue
535
primary cell
428
cell line
241
in vitro differentiated cells
3
stem cell
Organ
250
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
49
epithelium
44
blood
44
bodily fluid
12
kidney
embryo
Project
424
AMP
4
T1D
Genome assembly (visualization)
492
hg19
428
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
1
inconsistent assembly
organ_slims!
embryo
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
428 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
243
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
44
Panc1
6
1
1
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