Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 346ChIP-seq
  • 104total RNA-seq
  • 10ATAC-seq
  • 2DNase-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 346DNA binding
  • 104Transcription
  • 12DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 309transcription factor
  • 88recombinant protein
  • 58RNA binding protein
  • 32histone
  • 32histone modification
  • 28chromatin remodeller
  • 16broad histone mark
  • 16narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 217November, 2017
  • 92February, 2021
  • 57November, 2018
  • 27December, 2018
  • 20January, 2019
  • 20October, 2019
  • 13November, 2019
  • 8August, 2021
  • 5March, 2020
  • 5May, 2021
Available data
  • 463bam
  • 454bigWig
  • 358bed narrowPeak
  • 323bigBed narrowPeak
  • 321fastq
  • 104tsv
  • 45bed broadPeak
  • 45bigBed broadPeak
  • 14tagAlign
  • 2bed bed3+
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 464Homo sapiens
Biosample type
  • 1859tissue
  • 536primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 268liver
  • 64artery
  • 64blood vessel
  • 64heart
  • 64vasculature
  • 55pancreas
  • 54blood
  • 54bodily fluid
  • 49epithelium
  • 12kidney
  • 8embryo
Project
  • 460AMP
  • 4T1D
Genome assembly (visualization)
  • 530hg19
  • 464GRCh38
Lab
  • 464AMP-T2D consortium
Audit category:
  • 57inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 6inconsistent control run_type
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

464 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
EndoC_BH113331
H1-hESC8
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego