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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
120
ChIP-seq
17
ATAC-seq
Assay category
127
Transcription
120
DNA binding
17
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
48
August, 2017
38
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
265
bam
243
bigWig
128
bed narrowPeak
127
tsv
118
fastq
19
bed bed3+
18
tagAlign
15
bigBed narrowPeak
bed broadPeak
1
bigBed broadPeak
Organism
264
Homo sapiens
Biosample type
tissue
491
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
264
AMP
Genome assembly (visualization)
296
hg19
264
GRCh38
4
hg18
Lab
264
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
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