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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
80
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
80
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
83
May, 2021
37
August, 2017
26
December, 2017
23
August, 2021
23
February, 2018
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
225
bam
203
bigWig
127
tsv
88
bed narrowPeak
86
fastq
15
bed bed3+
10
bigBed narrowPeak
10
tagAlign
1
bed broadPeak
1
bigBed broadPeak
Organism
225
Homo sapiens
Biosample type
1595
tissue
448
cell line
434
primary cell
225
in vitro differentiated cells
2
stem cell
Organ
42
connective tissue
14
embryo
12
epithelium
9
liver
1
heart
1
pancreas
Project
225
AMP
Genome assembly (visualization)
257
hg19
225
GRCh38
4
hg18
Lab
225
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
lab.title!
Stephen Parker, UMich
month_released!
October, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
36
1
neural progenitor cell
7
6
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
8
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