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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
Assay category
91
DNA binding
Target of assay
186
histone
186
histone modification
95
narrow histone mark
91
broad histone mark
5
RNA binding protein
5
transcription factor
4
control
Date released
44
May, 2021
17
September, 2018
10
August, 2017
8
June, 2019
8
October, 2019
2
May, 2019
1
August, 2021
1
December, 2017
Available data
97
bam
97
bigWig
93
bed narrowPeak
51
tagAlign
34
fastq
21
bigBed narrowPeak
6
bed broadPeak
bigBed broadPeak
2
bed bed3+
Organism
91
Homo sapiens
Biosample type
242
tissue
90
primary cell
37
in vitro differentiated cells
9
cell line
1
stem cell
Organ
27
epithelium
27
pancreas
5
blood vessel
5
kidney
5
vasculature
5
vein
4
connective tissue
4
musculature of body
1
liver
Project
47
AMP
44
T1D
Genome assembly (visualization)
111
hg19
91
GRCh38
Lab
47
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
primary cell
monocyte
44
pancreatic endocrine cell
11
pancreatic ductal cell
6
endothelial cell of umbilical vein
5
mesenchymal stem cell
4
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stem cell
hESC
1
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