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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
132
total RNA-seq
93
single cell RNA-seq
47
ATAC-seq
21
DNase-seq
1
Hi-C
Assay category
225
Transcription
201
DNA binding
68
DNA accessibility
1
3D chromatin structure
Target of assay
192
histone
192
histone modification
99
narrow histone mark
93
broad histone mark
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
1
control
Date released
149
May, 2021
72
September, 2018
46
July, 2018
45
May, 2020
42
August, 2017
41
April, 2018
33
June, 2019
22
October, 2019
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
December, 2017
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
484
bam
478
bigWig
246
bed narrowPeak
229
fastq
225
tsv
98
tagAlign
90
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
1
hic
Organism
495
Homo sapiens
Biosample type
1328
tissue
492
primary cell
464
cell line
211
in vitro differentiated cells
3
stem cell
Organ
220
epithelium
192
pancreas
connective tissue
24
kidney
20
vasculature
16
blood vessel
12
vein
11
brain
11
liver
9
musculature of body
6
heart
3
eye
Project
304
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
574
hg19
495
GRCh38
1
hg18
Lab
304
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
495 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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stem cell
hESC
3
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