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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1046
total RNA-seq
765
ChIP-seq
142
ATAC-seq
106
single cell RNA-seq
18
small RNA-seq
16
WGBS
1
DNase-seq
1
Hi-C
Assay category
1170
Transcription
765
DNA binding
143
DNA accessibility
16
DNA methylation
1
3D chromatin structure
Target of assay
664
histone modification
663
histone
339
narrow histone mark
324
broad histone mark
98
transcription factor
32
RNA binding protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
454
February, 2021
207
May, 2020
187
May, 2021
182
August, 2017
177
October, 2019
164
July, 2018
96
May, 2019
79
July, 2019
72
September, 2018
64
April, 2019
52
November, 2017
49
April, 2018
47
October, 2018
40
May, 2024
39
November, 2019
36
December, 2017
35
February, 2023
23
June, 2019
13
November, 2018
12
May, 2023
10
October, 2017
9
March, 2020
7
August, 2020
7
September, 2017
6
January, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
August, 2021
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
2231
bigWig
2228
bam
1169
tsv
1144
bed narrowPeak
660
bigBed narrowPeak
509
fastq
bed broadPeak
234
bed bed3+
221
bigBed broadPeak
214
tagAlign
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
2095
Homo sapiens
Biosample type
1604
tissue
491
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
565
pancreas
504
connective tissue
422
adipose tissue
244
liver
205
epithelium
171
brain
171
heart
112
blood vessel
112
vasculature
66
bone element
60
artery
60
limb
51
kidney
29
nerve
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
1902
AMP
182
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
2145
hg19
2095
GRCh38
Lab
1851
AMP-T2D consortium
180
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
Audit category:
36
inconsistent ontology term
27
inconsistent control
Audit category:
67
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
xls
BIOSAMPLE
ASSAY
2095 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
DNase-seq
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
21
6
1
liver
147
75
1
bone tissue
58
left cardiac atrium
40
+ See 123 more…
primary cell
monocyte
53
84
13
pancreatic alpha cell
10
7
13
12
pancreatic beta cell
10
7
10
12
pancreatic ductal cell
4
13
4
10
pancreatic acinar cell
4
8
5
12
+ See 66 more…
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