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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
930
total RNA-seq
734
ChIP-seq
207
ATAC-seq
204
DNase-seq
58
single cell RNA-seq
18
small RNA-seq
16
WGBS
1
Hi-C
Assay category
1006
Transcription
734
DNA binding
411
DNA accessibility
16
DNA methylation
1
3D chromatin structure
Target of assay
632
histone modification
631
histone
331
narrow histone mark
300
broad histone mark
99
transcription factor
33
RNA binding protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
454
February, 2021
210
June, 2019
207
May, 2020
200
August, 2017
187
May, 2021
183
October, 2019
July, 2018
96
May, 2019
79
July, 2019
72
September, 2018
67
August, 2021
64
April, 2019
November, 2017
49
April, 2018
47
October, 2018
40
May, 2024
39
November, 2019
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
7
August, 2020
7
September, 2017
6
January, 2019
6
November, 2020
5
December, 2019
3
August, 2018
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
2005
bigWig
2001
bam
1081
bed narrowPeak
1005
tsv
597
bigBed narrowPeak
453
fastq
234
bed bed3+
225
bed broadPeak
215
bigBed broadPeak
169
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
2162
Homo sapiens
Biosample type
1686
tissue
482
primary cell
265
in vitro differentiated cells
247
cell line
3
stem cell
Organ
510
connective tissue
425
pancreas
424
adipose tissue
249
liver
201
heart
193
kidney
188
epithelium
154
brain
123
vasculature
121
blood vessel
96
limb
66
bone element
64
artery
53
musculature of body
31
nerve
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
1975
AMP
182
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
2204
hg19
2168
GRCh38
Lab
1859
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
34
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
November, 2017
BIOSAMPLE
ASSAY
2168 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue
382
1
2
liver
147
75
2
1
islet of Langerhans
144
25
22
1
6
kidney
20
75
13
bone tissue
58
+ See 140 more…
primary cell
monocyte
53
84
13
pancreatic alpha cell
10
7
13
5
pancreatic beta cell
10
7
10
3
pancreatic ductal cell
4
13
4
7
pancreatic acinar cell
4
8
5
7
+ See 70 more…
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