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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
148
total RNA-seq
97
single cell RNA-seq
48
ATAC-seq
22
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
247
Transcription
201
DNA binding
70
DNA accessibility
1
3D chromatin structure
Target of assay
195
histone
195
histone modification
99
narrow histone mark
96
broad histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
42
June, 2019
22
October, 2019
13
July, 2019
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
October, 2018
1
February, 2021
1
March, 2023
Available data
509
bam
503
bigWig
250
bed narrowPeak
247
tsv
223
fastq
98
tagAlign
94
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
25
bed bed3+
bed bed3
1
hic
Organism
519
Homo sapiens
Biosample type
1594
tissue
519
primary cell
399
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
31
connective tissue
28
kidney
22
vasculature
18
blood vessel
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
artery
1
pericardium
Project
328
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
604
hg19
519
GRCh38
Lab
328
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3
organ_slims!
artery
brain
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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