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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
110
total RNA-seq
30
single cell RNA-seq
16
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
142
Transcription
127
DNA binding
16
DNA accessibility
1
3D chromatin structure
Target of assay
125
histone
125
histone modification
63
broad histone mark
62
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
149
May, 2021
45
May, 2020
19
June, 2019
15
July, 2018
13
August, 2017
13
July, 2019
11
September, 2018
10
April, 2018
5
November, 2020
2
February, 2021
2
June, 2018
1
March, 2023
1
October, 2019
Available data
310
bam
295
bigWig
156
bed narrowPeak
142
tsv
95
tagAlign
64
fastq
45
bigBed narrowPeak
bed broadPeak
25
bigBed broadPeak
11
bed bed3+
1
bed bed3
1
hic
Organism
286
Homo sapiens
Biosample type
1604
tissue
370
cell line
286
primary cell
244
in vitro differentiated cells
3
stem cell
Organ
epithelium
192
pancreas
26
connective tissue
18
kidney
12
blood vessel
12
vasculature
10
musculature of body
10
vein
9
liver
7
heart
3
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
180
T1D
105
AMP
1
ITG
Genome assembly (visualization)
375
hg19
286
GRCh38
Lab
180
Kyle Gaulton, UCSD
105
AMP-T2D consortium
1
ITG
Audit category:
27
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed broadPeak
xls
organ_slims!
epithelium
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic endocrine cell
23
skeletal muscle satellite cell
7
1
1
osteoblast
5
2
pancreatic cell
7
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