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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
23
DNase-seq
2
small RNA-seq
Assay category
250
Transcription
195
DNA binding
72
DNA accessibility
Target of assay
187
histone
187
histone modification
96
narrow histone mark
91
broad histone mark
8
RNA binding protein
8
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
16
July, 2019
10
October, 2019
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
507
bam
501
bigWig
250
tsv
245
bed narrowPeak
227
fastq
98
tagAlign
89
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
26
bed bed3+
1
bed bed3
hic
Organism
517
Homo sapiens
Biosample type
1754
tissue
517
primary cell
400
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
327
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
600
hg19
517
GRCh38
Lab
327
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
517 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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