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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
149
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
26
DNase-seq
1
small RNA-seq
Assay category
250
Transcription
199
DNA binding
75
DNA accessibility
Target of assay
190
histone
190
histone modification
98
narrow histone mark
92
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
38
June, 2019
22
October, 2019
16
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
514
bam
508
bigWig
252
bed narrowPeak
250
tsv
229
fastq
98
tagAlign
96
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
29
bed bed3+
1
bed bed3
hic
Organism
524
Homo sapiens
Biosample type
1814
tissue
524
primary cell
462
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
334
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
611
hg19
524
GRCh38
Lab
334
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
organ_slims!
musculature of body
target.investigated_as!
other context
BIOSAMPLE
ASSAY
524 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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