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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
10
ChIP-seq
Assay category
27
DNA accessibility
10
DNA binding
Target of assay
14
histone
14
histone modification
narrow histone mark
6
broad histone mark
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
7
August, 2017
3
November, 2017
2
October, 2019
1
November, 2020
Available data
423
bam
407
bigWig
252
tsv
179
fastq
167
bed narrowPeak
79
bigBed narrowPeak
51
tagAlign
37
bed broadPeak
37
bigBed broadPeak
28
bed bed3+
1
bed bed3
1
hic
Organism
37
Homo sapiens
Biosample type
185
tissue
40
cell line
37
primary cell
1
in vitro differentiated cells
Organ
18
epithelium
10
kidney
8
brain
8
vasculature
6
connective tissue
5
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
Project
37
AMP
Genome assembly (visualization)
37
GRCh38
34
hg19
Lab
37
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
37 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
7
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
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