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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
39
ATAC-seq
27
DNase-seq
Assay category
111
DNA binding
66
DNA accessibility
Target of assay
102
histone
102
histone modification
54
narrow histone mark
48
broad histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
46
September, 2018
30
August, 2017
20
October, 2019
13
May, 2021
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
345
bam
339
bigWig
229
fastq
177
bed narrowPeak
156
tsv
105
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
14
tagAlign
1
bed bed3
1
hic
Organism
177
Homo sapiens
Biosample type
883
tissue
358
cell line
177
primary cell
128
in vitro differentiated cells
2
stem cell
Organ
105
epithelium
68
pancreas
22
kidney
20
vasculature
17
connective tissue
16
blood vessel
12
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
177
AMP
Genome assembly (visualization)
177
GRCh38
174
hg19
Lab
177
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
177 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
monocyte
13
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
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