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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
single cell RNA-seq
73
ChIP-seq
32
ATAC-seq
28
total RNA-seq
Assay category
120
Transcription
73
DNA binding
32
DNA accessibility
Target of assay
71
histone
71
histone modification
38
narrow histone mark
33
broad histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
72
September, 2018
48
July, 2018
42
August, 2017
38
April, 2018
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
November, 2017
2
October, 2018
Available data
503
bam
497
bigWig
250
tsv
241
bed narrowPeak
225
fastq
98
tagAlign
85
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
24
bed bed3+
1
bed bed3
1
hic
Organism
225
Homo sapiens
Biosample type
321
cell line
280
tissue
225
primary cell
118
in vitro differentiated cells
3
stem cell
Organ
187
pancreas
165
epithelium
6
brain
vasculature
3
connective tissue
2
blood vessel
Project
215
AMP
10
HPAP
Genome assembly (visualization)
225
GRCh38
220
hg19
Lab
215
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
primary cell
pancreatic alpha cell
12
7
13
10
pancreatic beta cell
12
7
10
10
pancreatic ductal cell
9
13
4
4
pancreatic acinar cell
9
8
5
4
pancreatic endocrine cell
23
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