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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
30
single cell RNA-seq
2
small RNA-seq
Assay category
142
Transcription
Target of assay
3
control
Date released
52
May, 2021
45
May, 2020
15
July, 2018
13
July, 2019
10
April, 2018
4
November, 2020
2
June, 2018
1
February, 2021
Available data
310
bam
295
bigWig
156
bed narrowPeak
142
tsv
95
tagAlign
64
fastq
45
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
11
bed bed3+
1
bed bed3
1
hic
Organism
142
Homo sapiens
Biosample type
917
tissue
142
primary cell
125
in vitro differentiated cells
70
cell line
Organ
epithelium
102
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
96
T1D
46
AMP
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
96
Kyle Gaulton, UCSD
46
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
53
pancreatic cell
7
mesenchymal cell
6
osteoblast
5
pancreatic stellate cell
4
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