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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
111
ChIP-seq
100
single cell RNA-seq
49
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
111
DNA binding
76
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
105
May, 2021
55
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
39
June, 2019
26
August, 2017
18
July, 2019
14
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
August, 2021
2
February, 2021
2
May, 2019
2
October, 2018
1
March, 2023
Available data
429
bam
423
bigWig
252
tsv
196
fastq
169
bed narrowPeak
84
bigBed narrowPeak
47
tagAlign
39
bed broadPeak
39
bigBed broadPeak
29
bed bed3+
1
bed bed3
1
hic
Organism
440
Homo sapiens
Biosample type
1542
tissue
448
cell line
440
primary cell
228
in vitro differentiated cells
2
stem cell
Organ
198
epithelium
165
pancreas
28
connective tissue
23
kidney
17
vasculature
14
brain
13
blood vessel
10
heart
10
liver
7
musculature of body
7
vein
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
293
AMP
136
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
510
hg19
440
GRCh38
Lab
293
AMP-T2D consortium
136
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
40
13
pancreatic alpha cell
10
4
12
13
pancreatic beta cell
10
4
12
10
pancreatic acinar cell
4
4
12
5
pancreatic ductal cell
4
7
10
4
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