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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
119
total RNA-seq
97
single cell RNA-seq
35
ATAC-seq
22
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
218
Transcription
169
DNA binding
57
DNA accessibility
1
3D chromatin structure
Target of assay
163
histone
163
histone modification
84
narrow histone mark
79
broad histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
42
June, 2019
22
October, 2019
15
July, 2019
7
August, 2020
6
November, 2020
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
434
bam
428
bigWig
218
tsv
204
bed narrowPeak
151
fastq
98
tagAlign
80
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
25
bed bed3+
1
bed bed3
1
hic
Organism
445
Homo sapiens
Biosample type
1656
tissue
464
cell line
445
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
159
epithelium
120
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
brain
12
vein
11
musculature of body
10
heart
6
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
254
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
530
hg19
445
GRCh38
Lab
254
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2019
September, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
445 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
12
10
pancreatic beta cell
7
12
6
pancreatic acinar cell
2
12
2
skeletal muscle myoblast
13
1
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