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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
ChIP-seq
150
DNase-seq
103
ATAC-seq
Assay category
458
DNA binding
253
DNA accessibility
Target of assay
395
histone modification
394
histone
210
narrow histone mark
184
broad histone mark
63
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
146
October, 2019
136
June, 2019
77
May, 2019
64
August, 2021
57
November, 2017
45
August, 2017
45
October, 2018
36
December, 2017
20
November, 2019
19
May, 2020
18
April, 2019
16
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
3
December, 2018
2
March, 2020
1
July, 2019
Available data
1587
bam
1556
bigWig
904
tsv
711
bed narrowPeak
467
bigBed narrowPeak
280
fastq
177
bed bed3+
164
bed broadPeak
149
bigBed broadPeak
116
tagAlign
64
xls
10
bed bedMethyl
10
bigBed bedMethyl
1
tagAlign bed3+
Organism
705
Homo sapiens
Biosample type
711
tissue
346
cell line
255
primary cell
128
in vitro differentiated cells
stem cell
Organ
190
brain
heart
152
kidney
100
blood vessel
100
vasculature
97
pancreas
91
limb
85
liver
62
artery
37
musculature of body
27
nerve
18
ureter
14
spleen
11
adipose tissue
11
connective tissue
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
709
AMP
2
T1D
Genome assembly (visualization)
711
GRCh38
681
hg19
Lab
647
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
organ_slims!
heart
BIOSAMPLE
ASSAY
711 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
kidney
20
13
64
liver
74
2
body of pancreas
26
4
4
islet of Langerhans
14
1
19
tibial nerve
24
2
1
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