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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
590
ChIP-seq
177
DNase-seq
157
ATAC-seq
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
590
DNA binding
334
DNA accessibility
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
156
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
53
July, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
16
November, 2018
13
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1711
bigWig
1703
bam
917
tsv
883
bed narrowPeak
555
bigBed narrowPeak
279
fastq
204
bed bed3+
190
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1836
Homo sapiens
Biosample type
1842
tissue
536
primary cell
463
cell line
265
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
381
pancreas
238
liver
203
brain
185
heart
165
kidney
104
blood vessel
104
vasculature
95
limb
66
bone element
62
artery
41
musculature of body
31
nerve
18
ureter
14
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1840
AMP
2
T1D
Genome assembly (visualization)
1842
GRCh38
1745
hg19
Lab
1725
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
lab.title!
Stephen Parker, UMich
organ_slims!
intestine
BIOSAMPLE
ASSAY
1842 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
islet of Langerhans
260
25
1
21
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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