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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
584
ChIP-seq
147
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
1
DNase-seq
Assay category
917
Transcription
584
DNA binding
148
DNA accessibility
16
DNA methylation
Target of assay
488
histone modification
487
histone
249
narrow histone mark
238
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
158
August, 2017
157
October, 2019
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
14
October, 2017
13
November, 2018
May, 2023
9
March, 2020
6
April, 2018
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1706
bigWig
1697
bam
917
tsv
877
bed narrowPeak
549
bigBed narrowPeak
274
fastq
204
bed bed3+
191
bed broadPeak
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1659
Homo sapiens
Biosample type
1665
tissue
491
primary cell
399
cell line
264
in vitro differentiated cells
3
stem cell
Organ
477
connective tissue
419
adipose tissue
380
pancreas
235
liver
176
brain
164
heart
100
blood vessel
100
vasculature
86
kidney
66
bone element
60
limb
58
artery
29
nerve
10
musculature of body
9
spleen
8
skeleton
1
pituitary gland
Project
1663
AMP
2
T1D
Genome assembly (visualization)
1665
GRCh38
1588
hg19
Lab
1558
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
January, 2019
May, 2023
BIOSAMPLE
ASSAY
1665 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
DNase-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
260
25
22
6
1
liver
147
75
1
kidney
20
64
bone tissue
58
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