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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
474
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
474
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
378
histone modification
377
histone
202
broad histone mark
175
narrow histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
152
August, 2017
143
May, 2020
121
October, 2019
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
12
May, 2023
12
November, 2017
9
March, 2020
8
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1712
bigWig
1703
bam
917
tsv
883
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1743
Homo sapiens
Biosample type
1743
tissue
450
cell line
438
primary cell
247
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
380
pancreas
219
liver
191
heart
165
kidney
121
brain
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
Project
1741
AMP
2
T1D
Genome assembly (visualization)
1743
GRCh38
1650
hg19
Lab
1625
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
lymph node
BIOSAMPLE
ASSAY
1743 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
22
6
liver
147
56
2
1
kidney
20
13
75
bone tissue
58
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