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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
631
total RNA-seq
508
ChIP-seq
174
DNase-seq
157
ATAC-seq
16
WGBS
13
small RNA-seq
6
single cell RNA-seq
Assay category
650
Transcription
508
DNA binding
331
DNA accessibility
16
DNA methylation
Target of assay
452
histone
452
histone modification
229
broad histone mark
223
narrow histone mark
54
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
control
Date released
452
February, 2021
163
June, 2019
155
October, 2019
139
August, 2017
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
54
July, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
35
February, 2023
15
November, 2018
14
October, 2017
12
May, 2023
8
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1359
bigWig
1349
bam
798
bed narrowPeak
649
tsv
506
bigBed narrowPeak
216
fastq
198
bed bed3+
188
bed broadPeak
173
bigBed broadPeak
97
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1499
Homo sapiens
Biosample type
1505
tissue
477
primary cell
251
in vitro differentiated cells
196
cell line
3
stem cell
Organ
480
connective tissue
422
adipose tissue
270
pancreas
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1503
AMP
2
T1D
Genome assembly (visualization)
1505
GRCh38
1371
hg19
Lab
1387
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
month_released!
July, 2018
organ_slims!
liver
BIOSAMPLE
ASSAY
1505 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
144
25
1
22
6
kidney
20
13
75
bone tissue
58
coronary artery
3
2
36
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