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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
529
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
529
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
489
histone modification
488
histone
249
narrow histone mark
239
broad histone mark
62
transcription factor
RNA binding protein
3
control
3
other context
3
other post-translational modification
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
156
August, 2017
116
July, 2018
88
May, 2019
64
August, 2021
61
April, 2019
61
July, 2019
57
November, 2017
39
November, 2019
38
May, 2021
35
February, 2023
35
May, 2024
December, 2017
34
October, 2018
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1651
bigWig
1647
bam
917
tsv
823
bed narrowPeak
501
bigBed narrowPeak
231
fastq
202
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1792
Homo sapiens
Biosample type
1798
tissue
527
primary cell
406
cell line
223
in vitro differentiated cells
Organ
475
connective tissue
417
adipose tissue
378
pancreas
203
brain
202
liver
181
heart
165
kidney
102
blood vessel
102
vasculature
96
limb
66
bone element
61
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1796
AMP
2
T1D
Genome assembly (visualization)
1798
GRCh38
1699
hg19
Lab
1685
AMP-T2D consortium
75
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
target.investigated_as!
RNA binding protein
target.investigated_as!!
RNA binding protein
BIOSAMPLE
ASSAY
1798 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
23
1
22
6
liver
147
46
2
1
kidney
20
13
75
bone tissue
58
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