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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
177
DNase-seq
158
ATAC-seq
97
ChIP-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
335
DNA accessibility
97
DNA binding
16
DNA methylation
Target of assay
437
histone modification
histone
232
narrow histone mark
204
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
143
May, 2020
119
August, 2017
116
July, 2018
64
August, 2021
61
July, 2019
39
November, 2019
38
May, 2021
35
February, 2023
31
December, 2017
22
November, 2018
15
October, 2018
14
October, 2019
12
May, 2023
8
October, 2017
7
March, 2020
6
April, 2018
5
April, 2019
5
May, 2024
4
May, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1247
bam
1222
bigWig
917
tsv
395
bed narrowPeak
244
bigBed narrowPeak
208
fastq
192
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
Organism
1366
Homo sapiens
Biosample type
1366
tissue
335
primary cell
228
cell line
187
in vitro differentiated cells
1
stem cell
Organ
479
connective tissue
421
adipose tissue
327
pancreas
197
liver
145
kidney
97
heart
66
bone element
51
blood vessel
51
vasculature
49
limb
42
artery
38
brain
37
musculature of body
18
ureter
10
spleen
8
skeleton
7
nerve
3
eye
Project
1366
AMP
Genome assembly (visualization)
1366
GRCh38
1318
hg19
Lab
1283
AMP-T2D consortium
75
Katalin Susztak, Upenn
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
18
missing controlled_by
month_released!
November, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1366 results
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total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
2
islet of Langerhans
260
1
22
9
6
liver
147
2
39
1
kidney
13
75
bone tissue
58
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