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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
33
ChIP-seq
1
DNase-seq
Assay category
89
Transcription
33
DNA binding
1
DNA accessibility
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
transcription factor
2
RNA binding protein
Date released
123
August, 2017
116
July, 2018
40
October, 2018
November, 2019
36
May, 2021
6
April, 2018
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
March, 2020
2
March, 2019
2
September, 2017
1
May, 2019
Available data
123
bam
123
bigWig
123
fastq
89
tsv
25
bed narrowPeak
19
bed bed3+
13
bigBed narrowPeak
6
bed broadPeak
6
tagAlign
Organism
117
Homo sapiens
Biosample type
123
tissue
29
primary cell
Organ
123
pancreas
19
liver
16
adipose tissue
16
connective tissue
Project
123
AMP
Genome assembly (visualization)
130
hg19
123
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
ChIP-seq
DNase-seq
tissue
islet of Langerhans
89
21
1
pancreas
12
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