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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
20
ChIP-seq
1
small RNA-seq
1
total RNA-seq
Assay category
143
DNA accessibility
20
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
Date released
68
June, 2019
64
August, 2021
18
April, 2019
11
May, 2023
2
July, 2019
2
October, 2019
Available data
152
bed narrowPeak
90
bam
90
bigWig
86
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
2
tsv
Organism
165
Homo sapiens
Biosample type
165
tissue
28
primary cell
12
cell line
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
0
skin of body
Project
165
AMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
90
AMP-T2D consortium
75
Katalin Susztak, Upenn
organ_slims!
stomach
BIOSAMPLE
ASSAY
165 results
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ATAC-seq
DNase-seq
ChIP-seq
small RNA-seq
total RNA-seq
tissue
kidney
75
13
20
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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