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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
561
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
561
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
RNA binding protein
3
control
3
other context
3
other post-translational modification
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
156
August, 2017
116
July, 2018
88
May, 2019
64
August, 2021
61
April, 2019
61
July, 2019
57
November, 2017
39
November, 2019
38
May, 2021
35
February, 2023
35
May, 2024
34
October, 2018
32
December, 2017
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1683
bigWig
1679
bam
917
tsv
855
bed narrowPeak
533
bigBed narrowPeak
263
fastq
202
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1824
Homo sapiens
Biosample type
1830
tissue
527
primary cell
389
cell line
257
in vitro differentiated cells
3
stem cell
Organ
475
connective tissue
417
adipose tissue
378
pancreas
234
liver
203
brain
181
heart
165
kidney
102
blood vessel
102
vasculature
96
limb
66
bone element
61
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1828
AMP
2
T1D
Genome assembly (visualization)
1830
GRCh38
1731
hg19
Lab
1717
AMP-T2D consortium
75
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
4
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
chromatin remodeller
target.investigated_as!!
RNA binding protein
BIOSAMPLE
ASSAY
1830 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
23
1
22
6
liver
147
72
2
1
kidney
20
13
75
bone tissue
58
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