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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
590
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
1
snATAC-seq
Assay category
918
Transcription
590
DNA binding
336
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
1
July, 2025
Available data
1712
bigWig
1703
bam
918
tsv
883
bed narrowPeak
555
bigBed narrowPeak
280
fastq
205
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
1
tbi
Organism
1853
Homo sapiens
Biosample type
1860
tissue
536
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
43
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1858
AMP
2
T1D
Genome assembly (visualization)
1860
GRCh38
1755
hg19
Lab
1741
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
2
Stephen Parker, UMich
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1860 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
22
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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