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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ATAC-seq
  • 42ChIP-seq
  • 2Hi-C
  • 1snATAC-seq
  • 1total RNA-seq
Assay category
  • 124DNA accessibility
  • 42DNA binding
  • 23D chromatin structure
  • 1Transcription
Target of assay
  • 37histone
  • 37histone modification
  • 20broad histone mark
  • 17narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 64August, 2021
  • 40May, 2024
  • 35February, 2023
  • 12May, 2023
  • 7August, 2020
  • 3October, 2019
  • 3September, 2020
  • 2March, 2019
  • 1July, 2025
  • 1March, 2023
  • 1October, 2017
Available data
  • bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1401tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 259bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 168Homo sapiens
Biosample type
  • 157tissue
  • 11primary cell
  • 1cell line
Organ
  • 75heart
  • 75kidney
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 14pancreas
  • 10epithelium
  • 2brain
  • 1adipose tissue
  • 1connective tissue
  • 1musculature of body
Project
  • 158AMP
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 215hg19
  • 169GRCh38
  • 5hg18
Lab
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 39AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

169 results

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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
snATAC-seq
total RNA-seq
tissue
kidney75
left cardiac atrium40
coronary artery35
islet of Langerhans3
adipose tissue1
dorsal plus ventral thalamus1
planum polare1
skeletal muscle tissue1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
chondrocytes1
cell line
Panc11
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