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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ATAC-seq
  • 42ChIP-seq
  • 2Hi-C
  • 1total RNA-seq
Assay category
  • 123DNA accessibility
  • 42DNA binding
  • 23D chromatin structure
  • 1Transcription
Target of assay
  • 37histone
  • 37histone modification
  • 20broad histone mark
  • 17narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 64August, 2021
  • 40May, 2024
  • 35February, 2023
  • 12May, 2023
  • 7August, 2020
  • 3October, 2019
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
  • 1October, 2017
Available data
  • bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 168Homo sapiens
Biosample type
  • 156tissue
  • 11primary cell
  • 1cell line
Organ
  • 75heart
  • 75kidney
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 14pancreas
  • 10epithelium
  • 2brain
  • 1adipose tissue
  • 1connective tissue
Project
  • 157AMP
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 215hg19
  • 168GRCh38
  • 5hg18
Lab
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 39AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

168 results

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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney75
left cardiac atrium40
coronary artery35
islet of Langerhans3
adipose tissue1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
chondrocytes1
cell line
Panc11
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