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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1213ChIP-seq
  • 234ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 1401Transcription
  • 1213DNA binding
  • 237DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 779histone modification
  • 778histone
  • 429transcription factor
  • 397narrow histone mark
  • 380broad histone mark
  • 98RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 3control
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 216August, 2017
  • 207May, 2020
  • 199October, 2019
  • 164July, 2018
  • 102August, 2021
  • 96May, 2019
  • 79July, 2019
  • 72September, 2018
  • 70November, 2018
  • 64April, 2019
  • 62December, 2017
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 23June, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2863Homo sapiens
Biosample type
  • 1655tissue
  • 506primary cell
  • 462cell line
  • 246in vitro differentiated cells
Organ
  • 606pancreas
  • 547connective tissue
  • 520liver
  • 418adipose tissue
  • 275epithelium
  • 236heart
  • 185brain
  • 180vasculature
  • 178blood vessel
  • 127kidney
  • 124artery
  • 66bone element
  • 60limb
  • 54blood
  • 54bodily fluid
  • 29nerve
  • 26embryo
  • 20musculature of body
  • 15spleen
  • 10vein
  • 8skeleton
  • 2eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2672AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2963hg19
  • 2869GRCh38
  • 5hg18
Lab
  • 2560AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 65missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

2869 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
DNase-seq
Hi-C
tissue
adipose tissue38212
islet of Langerhans26042261
liver147721
kidney2075
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4411
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
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